FastQCFastQC Report
Fri 10 May 2024
EGAF00005396883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43630534
Total Bases349 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCGC1339455630.699958886590757No Hit
AGCTGGAT1231164228.21794938379622No Hit
CATGAACA916453321.00486095356981No Hit
GTGACTTG840288819.25919128104185No Hit
GTGACTTA577130.1322766299399407No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)