FastQCFastQC Report
Fri 10 May 2024
EGAF00005396895

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396895
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114922728
Total Bases919.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTAGCGA3139847227.321377195292474No Hit
CTGTAACT2869562724.969496895339972No Hit
AGAGTGTG2788551124.264574540903695No Hit
GACCCTAC2586021122.50225995331402No Hit
GACCCTAA1157620.10073029244485042No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)