FastQCFastQC Report
Fri 10 May 2024
EGAF00005396898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41368096
Total Bases330.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCAGAA1274134830.799938193916393No Hit
TATGGTGT975027223.569544994287387No Hit
ATCTTACC974381823.553943599434696No Hit
CGAACCTG863148120.865067128059266No Hit
GCGTAGAA588250.1421989544793166No Hit
ATCTTACA544510.13162558895628168No Hit
CGAACCTA501060.12112232576524673No Hit
GATGGTGT422250.10207141271379762No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)