FastQCFastQC Report
Wed 8 May 2024
EGAF00005396901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87584797
Total Bases700.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATGTGGT2503844028.58765545805855No Hit
TCCTCCAA2233827725.504742563940635No Hit
AGGAGATG2113773324.13402065657582No Hit
CTACATCC1711629019.54253544710505No Hit
CGGAGATG6984210.7974226394564801No Hit
CTACATCA3596480.4106283422681222No Hit
TCCTCAAA2318000.26465780356835217No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)