FastQCFastQC Report
Wed 8 May 2024
EGAF00005396904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76505463
Total Bases612 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCCGTT2243364029.32292560597928No Hit
GGAGGAGG1907487524.93269663631733No Hit
TTGTTTCC1905385524.90522147418414No Hit
CCTAACAA1503287319.649411179957173No Hit
AACCCGTA1534700.20060005388111957No Hit
TTGTTTCA1294470.1691996818580132No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)