FastQCFastQC Report
Wed 8 May 2024
EGAF00005396907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67302767
Total Bases538.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGCTCC2149148131.932537038187448No Hit
AGCATGGT1774053126.35928921020439No Hit
GTTCACTG1704246225.322082225831817No Hit
TCGTGAAA1023081415.201178875751125No Hit
CAAGCTCA1606780.23873906997018413No Hit
AGCATGGA1110570.1650110462768938No Hit
GTTCACTA751230.11161948215294032No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)