FastQCFastQC Report
Wed 8 May 2024
EGAF00005396913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33677157
Total Bases269.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGAAC1102013032.72286315617438No Hit
CAGGATGG830711124.666901068875855No Hit
ACACTGTT794363223.587596779621272No Hit
TTTACCCA603645517.924479195200473No Hit
TTTACCAA597980.17756249436376118No Hit
ACACTGTA500700.1486764455800114No Hit
CAGGATGA346830.10298672183046806No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)