FastQCFastQC Report
Wed 8 May 2024
EGAF00005396916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85435618
Total Bases683.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTGCTCG2611307830.564627038807163No Hit
TGGTAAAC2107071024.662676402715316No Hit
GAAAGGGT1870033821.88822231027813No Hit
CTCCTCTA1869791221.885382745168414No Hit
CTCATCTA1200570.1405233587705774No Hit
CTCCTCAA865100.10125753406500788No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)