FastQCFastQC Report
Wed 8 May 2024
EGAF00005396919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63793809
Total Bases510.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGCAGC1642269125.74339306185652No Hit
ACCCTCCT1619296625.383287585163632No Hit
CAATGGAG1500375523.519139608045663No Hit
TGGAATTA1371654221.501368573241958No Hit
CAAGGGAG9861771.5458819836263422No Hit
CACTGGAG5707820.894729455643572No Hit
CCATGGAG2518210.394742066585176No Hit
ACCCTCCA984170.1542735910313805No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)