FastQCFastQC Report
Thu 9 May 2024
EGAF00005396922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57601063
Total Bases460.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGGAGC1803321531.307087162610177No Hit
TGCTCGTA1672451329.035077008908672No Hit
ATGAATCT1331770023.120580257346987No Hit
GATCTCAG911462115.82370276742983No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)