FastQCFastQC Report
Thu 9 May 2024
EGAF00005396925

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396925
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49352294
Total Bases394.8 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACGTCGG1610808932.63898735892601No Hit
ACGACATT1216471424.648730614224334No Hit
GTATGTCA1052017221.316480243046048No Hit
TGTCAGAC1013511520.53625916558205No Hit
CACGTCGA723840.1466679542798963No Hit
ACGACATA532830.1079645862054558No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)