FastQCFastQC Report
Wed 8 May 2024
EGAF00005396928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43597650
Total Bases348.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCTGTC1516905634.79328817034863No Hit
GAAACCCT1449667033.251035319564245No Hit
AGCGAAAG1292273429.640895782226796No Hit
CCGTGTGA4072130.9340251137389286No Hit
AGCGACAG1938690.4446776374414676No Hit
GAAACCCA842240.19318472440601728No Hit
TTTCTGTA493980.11330427213393382No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)