FastQCFastQC Report
Wed 8 May 2024
EGAF00005396931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21163101
Total Bases169.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGACGCCC629518229.74602824037933No Hit
CTGACTGA539345325.48517346300053No Hit
ACCGTATG516650924.412816439329944No Hit
GATTAGAT391609918.50437230347292No Hit
GAGTAGAT1095160.5174855991095068No Hit
TGACGCCA759410.35883682641782977No Hit
ACCGTATA253620.1198406604022728No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)