FastQCFastQC Report
Wed 8 May 2024
EGAF00005396934

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396934
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19924025
Total Bases159.3 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTTAGC519644826.081316400677075No Hit
GAGACTAT500123325.101519396808627No Hit
TCTCAGTG472065723.693289884950456No Hit
ATAGGCCA464409523.309020140257804No Hit
ATACGCCA1895140.9511833075897064No Hit
TCTCAGTA209490.10514441735542893No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)