FastQCFastQC Report
Wed 8 May 2024
EGAF00005396937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32617945
Total Bases260.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATACCC896079427.471975932266734No Hit
TGTCTATG791687724.27153825907794No Hit
ACCACGAA784145924.040321976139207No Hit
GTGGGTGT738935722.654268992114616No Hit
CAATACCA1006360.3085295532873086No Hit
ACCACAAA590250.18095867167597468No Hit
GGGGGTGT562380.17241429525986385No Hit
TGTCTATA403130.1235914770228474No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)