FastQCFastQC Report
Thu 9 May 2024
EGAF00005396940

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396940
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30411023
Total Bases243.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCAAAT829069027.26212136960996No Hit
CTCGCGTA770768625.345040184935574No Hit
TCTATCCG721314623.718853522290257No Hit
AAATGTGC694150122.825608332873248No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)