FastQCFastQC Report
Wed 8 May 2024
EGAF00005396943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37685939
Total Bases301.4 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGGCT1113369129.543355679687323No Hit
CGGGCTTA1051361727.897983383139263No Hit
AAACAAAC798217521.180777796196082No Hit
TTCATCGG741512319.676099884362706No Hit
TGGGCTTA1534220.4071067460996527No Hit
AAACAAAA760170.20171183740439638No Hit
AAAAAAAC716940.1902407155093044No Hit
CGGGCTAA651990.17300617081612324No Hit
TTCATCGA571950.15176748017344083No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)