FastQCFastQC Report
Thu 9 May 2024
EGAF00005396946

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396946
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28017431
Total Bases224.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCCAGC1039885037.11564418593554No Hit
CGATAGCT665971923.769913094458946No Hit
GTCAGCTA540680719.298011298751838No Hit
AATGTTAG513709918.335367721615874No Hit
GTCAGCAA928410.3313687111427168No Hit
AATGGTAG575910.20555417804009224No Hit
TCGCCAGA328770.11734480581035427No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)