FastQCFastQC Report
Wed 8 May 2024
EGAF00005396952

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396952
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22659742
Total Bases181.2 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCGGTC625260227.593438619027527No Hit
CCTGAAGG590502926.05955972490772No Hit
AAGATCAT573889225.326378385067226No Hit
TGATCTCA429101418.936729288444678No Hit
TGATATCA2177340.9608847267546118No Hit
TGATTTCA836710.36924957044965473No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)