FastQCFastQC Report
Fri 10 May 2024
EGAF00005396955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53083036
Total Bases424.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTACGC1454951427.40897110707835No Hit
CCCAGGAT1360412125.628001005820387No Hit
GTTCCTCA1268445123.89548894678895ABI Solid3 Adapter A (100% over 8bp)
TAAGTATG1176146022.15672065177282No Hit
TAAGTATA677400.12761138982329495No Hit
GTTCTTCA538580.10145990896225303No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)