FastQCFastQC Report
Wed 8 May 2024
EGAF00005396958

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396958
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32590407
Total Bases260.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTGCGC1148256435.23295674092072No Hit
GAGGATCT815281525.015996271540885No Hit
AGACCATA594389118.238161309246614No Hit
CTTATGAG591192018.140061889991124No Hit
CTTAGGAG6773362.078329368516324No Hit
CTTCTGAG1277250.3919098033970549No Hit
TCCTGCGA346290.10625519343774996No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)