FastQCFastQC Report
Wed 8 May 2024
EGAF00005396961

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396961
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21248539
Total Bases169.9 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTGCGG578716327.235580761576127No Hit
TGCACAAA525888424.749391005188638No Hit
GCAGTTCT513387124.161054084706716No Hit
AAGCAGTC482795922.721369219784947No Hit
AAGCAGTA358980.1689433800601538No Hit
CTTTGCGA348850.1641759934647742No Hit
GCAGTTCA225640.1061908303436768No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)