FastQCFastQC Report
Wed 8 May 2024
EGAF00005396964

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396964
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42516458
Total Bases340.1 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGCTG1345775531.653048332483387No Hit
CGTTTGAT967192622.74866358810981No Hit
GTAGCACA942714122.172921836527397No Hit
TCCAATGC930025921.874491520436624No Hit
GGAGCACA2662380.6261998588875866No Hit
AAGCGCTA510960.12017934325573405No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)