FastQCFastQC Report
Wed 8 May 2024
EGAF00005396970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22127191
Total Bases177 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCAGAGC565360125.550468651895308No Hit
TTATCGTT545589724.656979731408292No Hit
CATCTCCA529515923.930552233222915No Hit
GCGGATAG525981223.77080760047672No Hit
CATCTCGA1498020.6770041439060204No Hit
GCGGCTAG754920.3411729938969659No Hit
CATCTCAA444190.2007439624848902No Hit
GCGGATAA398350.1800273699449695No Hit
TTATCGTA343270.15513491974647844No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)