FastQCFastQC Report
Wed 8 May 2024
EGAF00005396976

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396976
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75574094
Total Bases604.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTGCCT2037460226.959770103231406No Hit
CGCCCGTA1942986525.709689619302615No Hit
ACGAAAGC1848484724.459237314839662No Hit
TAAGTTAG1639555321.69467357425416No Hit
GGTTGCCT1569930.20773388298905704No Hit
TAAGGTAG1555790.20586287147550852No Hit
GTTTGCCA1066560.14112772559337594No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)