FastQCFastQC Report
Fri 10 May 2024
EGAF00005396979

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396979
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences114697682
Total Bases917.5 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCTCC3203624827.931033514696484No Hit
TGACTAGT2980437725.98516071144315No Hit
GATAGGTA2774579924.190374658138253No Hit
CCGTACAG2418078321.082189786538144No Hit
ATCGCTCA1972280.17195465205652544No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)