FastQCFastQC Report
Wed 8 May 2024
EGAF00005396982

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396982
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88456461
Total Bases707.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGATACGA2540954028.7254765935074No Hit
TCCGCTAC2408917927.232808918276756No Hit
ATGCGATT2218053925.07509202747779No Hit
CATATGCG1603451418.127012791072435No Hit
ATGCGATA1095410.12383606438878444No Hit
TCCGCTAA904260.10222656319022305No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)