FastQCFastQC Report
Fri 10 May 2024
EGAF00005396985

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005396985
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46702439
Total Bases373.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCACAGG1197949025.650673190751345No Hit
CGGGAGTA1187942825.43641885598309No Hit
TCTTGTCC1120213723.98619266972331No Hit
AAACTCAT1111319423.795746513367323No Hit
AAACTAAT1144720.24510925435821457No Hit
GTCACAGA501510.10738411327939426No Hit
AAAATCAT497020.10642270738793749No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)