FastQCFastQC Report
Sat 28 May 2022
EGAF00005397870

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005397870
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13884146
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC224190.16147194073009605No Hit
CAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATCCCAATGGTG150910.10869231712198936No Hit
CCTCGATGTTGGATCAGGACATCCCAATGGTGCAGCCGCTATTAAAGGTT140460.1011657468885735No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)