FastQCFastQC Report
Wed 11 May 2022
EGAF00005398225

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005398225
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences85753539
Sequences flagged as poor quality0
Sequence length51
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCCTGAACGCGCCCGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCA37586194.383048261133573RNA PCR Primer, Index 1 (100% over 32bp)
GCCCCGCGGACTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCTA23335102.7211821543598336RNA PCR Primer, Index 27 (100% over 40bp)
CCCTGAACGCGCCCGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT17888262.086008368704177RNA PCR Primer, Index 1 (100% over 35bp)
CTGCTGTGATGACATTCCAATTAAAGCACGTGTTAGACTGCTGACGCGGGT16660561.9428422656702249No Hit
TATTGCACTCGTCCCGGCCTCCTGGAATTCTCGGGTGCCAAGGAACTCCAG16547531.9296614685488374RNA PCR Primer, Index 1 (100% over 29bp)
TTTCTATGATGAATCAAACTAGCTCACTATGACCGACAGTGAAAATACATG12913911.505933183702191No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATGGAATTCTCGGGTGCC12069701.4074871009113687No Hit
ACCACCCTGAACGCGCCCGATGGAATTCTCGGGTGCCAAGGAACTCCAGTC11441611.3342434765287063RNA PCR Primer, Index 1 (100% over 31bp)
CCCCCCTCGCGGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTC10015911.167987947412876RNA PCR Primer, Index 13 (97% over 37bp)
TGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATT9979121.163697745465642RNA PCR Primer, Index 8 (97% over 36bp)
CCCTGAACGCGCCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATT9120931.0636214092575236RNA PCR Primer, Index 8 (97% over 36bp)
CCGCCGCCGGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCC7929730.924711690324524RNA PCR Primer, Index 27 (100% over 38bp)
TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCTATCTCGTATGCC7552890.8807671482806092RNA PCR Primer, Index 27 (100% over 51bp)
CCACCCTGAACGCGCCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC7183740.8377193622294702RNA PCR Primer, Index 1 (100% over 33bp)
ACCCGGCCCGGACACGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT6564370.7654926055005147RNA PCR Primer, Index 1 (100% over 35bp)
TATTGCACTTGTCCCGGCCTGTTGGAATTCTCGGGTGCCAAGGAACTCCAG6484490.7561775380488961RNA PCR Primer, Index 1 (100% over 29bp)
CCTGGATGATGATAAGCAAATGCTGACTGAACATGAAGGTCTTAATTAGCT6162900.7186758787879297No Hit
GCCCCGCCGGGGTCGGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC5766210.6724165634726749RNA PCR Primer, Index 1 (100% over 33bp)
CACCCGGCCCGGACACGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA5547080.6468630991427654RNA PCR Primer, Index 1 (100% over 34bp)
CCGCCGCCGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCT5296370.6176269879660593RNA PCR Primer, Index 27 (100% over 39bp)
ACCTCACCCGGCCCGGACACGTGGAATTCTCGGGTGCCAAGGAACTCCAGT5117890.5968138527787173RNA PCR Primer, Index 1 (100% over 30bp)
TCGCGTGATGACATTCTCCGGAATCGCTGTACGGCCTTGATGAAAGCACAT4853980.5660384465298861No Hit
GCGCTGGAGCGTCGGGCCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA4726380.5511585941660087RNA PCR Primer, Index 1 (100% over 32bp)
TCGTACGACTCTTAGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC4495470.5242314255974905RNA PCR Primer, Index 1 (100% over 33bp)
ATCCCGGACGAGCCCCCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC4294740.5008236453075132RNA PCR Primer, Index 1 (100% over 33bp)
CAACGGAATCCCAAAAGCAGCTGTGGAATTCTCGGGTGCCAAGGAACTCCA3979650.4640799722563054RNA PCR Primer, Index 1 (100% over 28bp)
CACAGATGATGAACTTATTGACGGGCGGACAGAAACTGTGTGCTGATTGTC3783720.44123193562891905No Hit
CCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTC3668860.42783773623616866RNA PCR Primer, Index 13 (97% over 37bp)
CCCTGGCGGAGCGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTC3539650.4127701365187972RNA PCR Primer, Index 13 (97% over 37bp)
TATTGCACTTGTCCCGGCCTGTAATGGAATTCTCGGGTGCCAAGGAACTCC3377110.39381581674430954RNA PCR Primer, Index 1 (100% over 27bp)
ACCCCCCTCGCGGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATT3359560.3917692539779612RNA PCR Primer, Index 8 (97% over 36bp)
CCTGAACGCGCCCGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATT3125300.3644514309782597RNA PCR Primer, Index 8 (97% over 36bp)
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTTGGAATTCTCGGGTGCCA3086710.3599513251575542No Hit
CCTCACCCGGCCCGGACACGTGGAATTCTCGGGTGCCAAGGAACTCCAGTC3047660.35539757723585025RNA PCR Primer, Index 1 (100% over 31bp)
GCCCCGCCGGGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCT3029660.353298538501134RNA PCR Primer, Index 27 (100% over 39bp)
CCCGGCGGGCGCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTC2991890.34889405555612113RNA PCR Primer, Index 13 (97% over 37bp)
GTACGACTCTTAGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT2905440.3388128389663312RNA PCR Primer, Index 1 (100% over 35bp)
CACCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT2893970.33747528483926476RNA PCR Primer, Index 1 (100% over 35bp)
CGGCCGGGCGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCT2892420.3372945342815531RNA PCR Primer, Index 27 (100% over 39bp)
CCACCGGCCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCTA2876420.3354287220729164RNA PCR Primer, Index 27 (100% over 40bp)
CCCCGGCCCCGCGTCCTCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA2742050.3197593979182597RNA PCR Primer, Index 1 (100% over 32bp)
TGCAGCTGATGATACAGCTTCTTTCCCCATCAGATCGACCCTGTTGATCTC2675580.31200811432400477No Hit
CCCCGCGGGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCT2600910.30330060197282355RNA PCR Primer, Index 27 (100% over 39bp)
CCCTGAACGCGCCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTC2409490.28097849116174667RNA PCR Primer, Index 13 (97% over 37bp)
GGTCCAGGATGAAACCTAATTTGAGTGGACATCCATGGATGAGAAATGCGG2406010.28057267700636823No Hit
CACCCTGAACGCGCCCGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC2295630.26770090503203603RNA PCR Primer, Index 1 (100% over 33bp)
CCCCCGACCGGCGACCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA2287900.26679948450873847RNA PCR Primer, Index 1 (100% over 34bp)
CCGCCGCCGGGCGCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATT2214140.25819809022692347RNA PCR Primer, Index 8 (97% over 36bp)
CCCGCCGGGCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCTA2163780.25232544630023956RNA PCR Primer, Index 27 (100% over 40bp)
AGTGATGATGACCCCAGGTAACTCTGAGTGTGTCGCTGATGCCATCACCGC2125960.24791513269207469No Hit
GTTTGTGATGACTTACATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA2066910.241029119509575RNA PCR Primer, Index 1 (100% over 34bp)
CCCGAGCCGCCTGGACTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT2042310.23816043323879613RNA PCR Primer, Index 1 (100% over 35bp)
TCCCGGACGAGCCCCCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA1960240.22858998274112047RNA PCR Primer, Index 1 (100% over 34bp)
TCTGGACGCGAGCCGGGCCCTTGGAATTCTCGGGTGCCAAGGAACTCCAGT1930070.22507176059520995RNA PCR Primer, Index 1 (100% over 30bp)
CCGCCGGGCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCTAT1911240.22287593285217067RNA PCR Primer, Index 27 (100% over 41bp)
ACCCTGAACGCGCCCGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA1905610.22221940018125663RNA PCR Primer, Index 1 (100% over 34bp)
CCTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA1842070.2148097934477083RNA PCR Primer, Index 1 (100% over 34bp)
TCAGTAGTGGGATCGCGCCTGTGAATAGCCACTGCACTCCAGCCTGGGCAA1814380.2115807721941365No Hit
CCCCGGGGCCGCGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTC1805180.21050793017417044RNA PCR Primer, Index 13 (97% over 37bp)
TCAGTAGTGGGATCGCGCCTGTGAATAGCCACTGCACTCCAGCCTGAGCAA1779330.20749347732459184No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTGGAATTCTCGGGTGCC1739810.20288492116925927No Hit
GGCTAATGATGGAAAAATCATTATTGGAAAAGAATGACATGAACAAAGGAA1722620.20088033917760525No Hit
CGGCCGGGCGCGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCC1707210.19908332879416207RNA PCR Primer, Index 27 (100% over 38bp)
CTGCGATGATGGCATTTCTTAGGACACCTTTGGATTAATAATGAAAACAAC1686600.19667992944291196No Hit
ACCTCACCCGGCCCGGACTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC1686190.19663211800506566RNA PCR Primer, Index 1 (100% over 33bp)
GCCCCGCCGGGGTCGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA1676240.19547181603781974RNA PCR Primer, Index 1 (100% over 34bp)
GCGCACGTGTTAGGACCCGATGGAATTCTCGGGTGCCAAGGAACTCCAGTC1671170.19488058679420797RNA PCR Primer, Index 1 (100% over 31bp)
CGCCCCGGGCGGGTCGCGCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGT1669210.19465202479865001RNA PCR Primer, Index 1 (100% over 30bp)
CCCGGCCCGGACACGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATT1617250.18859279965110246RNA PCR Primer, Index 8 (97% over 36bp)
CCCCGACCGGCGACCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT1613080.18810652234422653RNA PCR Primer, Index 1 (100% over 35bp)
CCCCCCTCGCGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCC1592650.18572411338032357RNA PCR Primer, Index 27 (100% over 38bp)
TTCCTATGATGAGGACCTTTTCACAGACCTGTACTGAGCTCCGTGAGGATA1590030.18541858663115934No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTGGAATTCTCGGGTG1570470.18313763120610102No Hit
ACCACGTTCCCGTGGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATT1557270.18159833613397575RNA PCR Primer, Index 8 (97% over 36bp)
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCTCTGGAATTCTCGGGTGCC1524050.1777244435357939No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTTGGAATTCTCGGGTGCCA1505640.17557759336323134No Hit
ACCACCCTGAACGCGCCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA1500150.17493738654914287RNA PCR Primer, Index 1 (100% over 32bp)
CCCCGGGGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCTAT1482580.17288849151753377RNA PCR Primer, Index 27 (100% over 41bp)
CCCTGGCGGAGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCC1479850.17257013730943513RNA PCR Primer, Index 27 (100% over 38bp)
CGAGCCGGGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCTA1463440.17065651366295215RNA PCR Primer, Index 27 (100% over 40bp)
TCACCCGGCCCGGACACGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC1445680.16858546211136546RNA PCR Primer, Index 1 (100% over 33bp)
ACGGCCCTGGCGGAGCGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCAC1443680.16835223558528586RNA PCR Primer, Index 1 (100% over 33bp)
TGTCTGAGCGTCGCTTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT1423290.16597449115190452RNA PCR Primer, Index 1 (100% over 35bp)
TATCTGTGATGATCTTATCCCGAACCTGAACTTCTGTTGAAAAAAAAAAAC1408210.1642159631452645No Hit
CCTCACCCGGCCCGGACTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA1382680.1612388265398586RNA PCR Primer, Index 1 (100% over 34bp)
TCACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCCATGGAATTCTC1348330.15723316095444176No Hit
CCCCGCCCCCGGATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCC1340980.1563760534710993RNA PCR Primer, Index 27 (100% over 38bp)
CCCCGGCGCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCTA1315090.15335693609099912RNA PCR Primer, Index 27 (100% over 40bp)
CGCCTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCA1295020.1510165079017905RNA PCR Primer, Index 1 (100% over 32bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATGGAATTCT1290910.15053722739069697No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGG1277010.14891630303444386No Hit
TATTGCACTTGTCCCGGCCTGTATGGAATTCTCGGGTGCCAAGGAACTCCA1269070.14799039372590791RNA PCR Primer, Index 1 (100% over 28bp)
GTCTACGGCCATACCACCCTGAACGCGCCCGATGGAATTCTCGGGTGCCAA1230380.1434786265788984No Hit
TATTGCACTCGTCCCGGCCTCATGGAATTCTCGGGTGCCAAGGAACTCCAG1208940.14097843821932526RNA PCR Primer, Index 1 (100% over 29bp)
GCGGCTGATGACAGCACTTCTGCTGAGACGCTGTGATTGCTCTGTCCAAAG1201680.14013182592965637No Hit
CCCGGTCAGCCCCTCTCCGGCCCCGTGGAATTCTCGGGTGCCAAGGAACTC1200590.14000471747294302RNA PCR Primer, Index 1 (100% over 26bp)
TATCGGGCCCATGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCTA1169360.13636288526821033RNA PCR Primer, Index 27 (100% over 40bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGATGGAATTCTCGGGTGCCA1156780.13489589041916974No Hit
CCCCGGCCCCGCGTCCTCCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTC1126270.13133801976382573RNA PCR Primer, Index 1 (100% over 31bp)
CCCGGCGGCCGTCGCGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA1105090.12886815085264294RNA PCR Primer, Index 1 (100% over 34bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCTGGAATTCTC1090650.12718425533434838No Hit
CCGCCGCGGCCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCC1069380.12470389122949199RNA PCR Primer, Index 27 (100% over 38bp)
GCTCGGGGGGCCCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATT1063650.12403569723227399RNA PCR Primer, Index 8 (97% over 36bp)
TACCACCCTGAACGCGCCCGATGGAATTCTCGGGTGCCAAGGAACTCCAGT1060540.12367302998422024RNA PCR Primer, Index 1 (100% over 30bp)
CCCGGCGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCTAT1053080.12280309504194341RNA PCR Primer, Index 27 (100% over 41bp)
CCGCGAGGGGGGCCCGGGCATGGAATTCTCGGGTGCCAAGGAACTCCAGTC1052900.12278210465459624RNA PCR Primer, Index 1 (100% over 31bp)
TATTGCACTCGTCCCGGCCTCTGGAATTCTCGGGTGCCAAGGAACTCCAGT1037160.12094661189434994RNA PCR Primer, Index 1 (100% over 30bp)
CCCCCGCCCCACCCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT1023160.11931402621179284RNA PCR Primer, Index 1 (100% over 35bp)
TCCTGTACTGAGCTGCCCCGAGTGGAATTCTCGGGTGCCAAGGAACTCCAG1013700.11821086474343642RNA PCR Primer, Index 1 (100% over 29bp)
GTGAAATGATGGCAATCATCTTTCGGGACTGACCTGAAATGAAGAGAATAC1011170.11791583318794575No Hit
CGGCCCTGGCGGAGCGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA1008860.11764645655032382RNA PCR Primer, Index 1 (100% over 34bp)
CCCGGCGGGCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCTAT1003700.11704473211303851RNA PCR Primer, Index 27 (100% over 41bp)
ACCCTGAACGCGCCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT997900.11636837518740771RNA PCR Primer, Index 1 (100% over 35bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTGGAATTCTCGGGTGC990350.11548794505145729No Hit
AATACATGATGATCTCAATCCAACTTGAACTCTCTCACTGATTACTTGATG983410.11467864900596116No Hit
CCGGTCCCCCGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCC970500.11317317178011743RNA PCR Primer, Index 27 (100% over 38bp)
CCCCCGTCCCGGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATT969960.11311020061807595RNA PCR Primer, Index 8 (97% over 36bp)
CGGCTCCGGGACTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCT957260.1116292121774706RNA PCR Primer, Index 27 (100% over 39bp)
CCCGGCGGGCGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCC955990.11148111333341006RNA PCR Primer, Index 27 (100% over 38bp)
CCCGCGCCCCCGCCCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACA939500.10955816062588392RNA PCR Primer, Index 1 (100% over 34bp)
GTCGCGTGATGACATTCTCCGGAATCGCTGTACGGCCTTGATGAAAGCACA932540.10874653231512696No Hit
ACCACCGGCCCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATTCCT928270.10824859368194706RNA PCR Primer, Index 27 (100% over 39bp)
TATTGCACTCGTCCCGGCCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTC923690.10771450493722481RNA PCR Primer, Index 1 (100% over 31bp)
CCCCGCCGGCGGGCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACATT918820.10714659834622103RNA PCR Primer, Index 8 (97% over 36bp)
CCCGCCGCCCCTCCTCCTCCTGGAATTCTCGGGTGCCAAGGAACTCCAGTC912610.10642242998274393RNA PCR Primer, Index 1 (100% over 31bp)
CTGTCTGAGCGTCGCTTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACAT872270.10171825095171876RNA PCR Primer, Index 1 (100% over 35bp)
AGGGCGCGCGGGTCGGGGCGTGGAATTCTCGGGTGCCAAGGAACTCCAGTC870340.10149318735405194RNA PCR Primer, Index 1 (100% over 31bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGGAATTCTCGGGTGCCAAGG864100.10076552059268365Illumina Small RNA Adapter 2 (100% over 21bp)

[FAIL]Adapter Content

Adapter graph