FastQCFastQC Report
Tue 23 May 2023
EGAF00005399051

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005399051
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51303108
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT934510.1821546562052342No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT810700.15802161537659667No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT592070.11540626349577104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)