FastQCFastQC Report
Tue 23 May 2023
EGAF00005399064

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005399064
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46442627
Sequences flagged as poor quality0
Sequence length101
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAG495040.10659173091134573No Hit
CGGGTGTCCGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGG476820.10266861088628772No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT469180.10102357043670247No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)