FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005399465

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005399465
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2126813
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGTCCACATGTGTTATTCATATTTTTCTTATATGGGGAGATCTCTGC27220.12798492392137906No Hit
TTCGGTCTCGCTAGCGACTATACATTTTTCTTATATGGGGATCTTAATTG27050.1271856058807239No Hit
GATGAAAGTGGTGTAGGCTTTTTTTCTTTCTTATATGGGGTCCTCCACCT25970.1221075853871497No Hit
GCTTCCATCACAAACCATCACGTACTTTTCTTATATGGGAGATCACTTGT25470.11975664997345795No Hit
CTCTACGGTAGCCTCGCCGTACGCTGTTTCTTATATGGGAGACACAGCAA25270.11881627580798125No Hit
TAAACCGTCTTGCCGTTCCATGAATGTTTCTTATATGGGGATTGTTACCA25070.11787590164250453No Hit
CATGACACAAGTCTACCTCCAACTCGTTTCTTATATGGGGGAGAGAAGAG24510.11524285397916977No Hit
CGCGGTATCTGCAAGTTATCGTACGCTTTCTTATATGGGGATGATTCCTA24260.1140673862723239No Hit
CTCTACGGTAGCCTCGAGTCTTCTATTTTCTTATATGGGCAATGGAGAGT23850.11213961923309666No Hit
AACCAAAGCGTCAAGTAAGAATGTCTTTCTTATATGGGGATTCAGGAAAT23740.11162241344208447No Hit
GAGCAGATCAACACCAAAAGCCACCGTTTCTTATATGGGGAACATTTATT22840.10739072969743932No Hit
CTCGTACAGCACCGCTGTAAGCCTATTTTCTTATATGGGCTCCTCTGCTC22790.10715563615607013No Hit
CATTCGCCACAAGTAAAATGCTCGCATTTCTTATATGGGAGACACAGCAA22700.10673246778160562No Hit
GCGCGATCATGCCACGCAGCAACGACTTTCTTATATGGGGATTCAGGAAA22610.1063092994071411No Hit
ACGGGTCAGCGAGAAATATCATCCGTTTTCTTATATGGGATACCCGATGA22550.1060271871574981No Hit
AAATGCCAGGGTGTTGTCCCAAATCCTTTCTTATATGGGGAGGACAGATT22420.10541594394993825No Hit
AAATGCCAGGGTGTTGATAACAGCATTTTCTTATATGGGGAGGACAGATT22330.10499277557547372No Hit
CTCGGGACAATTGCTGAAGGCGTCCTTTTCTTATATGGGGCCCTCACCCA21920.10306500853624649No Hit
CTCTACGGTAGCCTCGGGACTCCCTATTTCTTATATGGGATCAGACACAG21820.10259482145350814No Hit
ACGGGTCAGCGAGAAAATACCGTCCGTTTCTTATATGGGGAAAAAGAACA21740.10221867178731746No Hit
GCTTCCATCACAAACCGGGATCTGGCTTTCTTATATGGGAGAGGAGCTTA21720.1021246343707698No Hit
CGAATGTTCAGCAACTTCACTATCTTTTTCTTATATGGGGTGATCTGGTA21530.10123127891356691No Hit
TCACAAGGTTGAACTCCAGTACCGAATTTCTTATATGGGGATACAGAAGT21470.1009491666639239No Hit
CGTTCTGTCAAGAAGTTGGTACTCGGTTTCTTATATGGGGAGCCCAGAGA21470.1009491666639239No Hit
GGCGACTTCCGTAGTAGTGTCGAATTTTTCTTATATGGGGGATGATAGAA21360.10043196087291173No Hit
GCACATATCACGAAGGGAGGCCCAGAGTTTCTTATATGGGGAAGTGAGTA21360.10043196087291173No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)