FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005399520

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005399520
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10388163
Sequences flagged as poor quality0
Sequence length76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGATTAC63600.024.097713
GGGATTA73000.022.8642112
GATTACA69250.021.9304414
ATTACAG76250.019.77757315
TGGGATT104400.017.6966911
AAAGTGC76000.017.1684274
TTACAGG84850.017.07198716
CCAAAGT90050.015.7331212
TACAGGC75950.015.24887817
CAAAGTG96100.014.1956593
ACAGGCG54250.014.06049718
AAGTGCT92100.014.0158255
CTGGGAT138050.013.6618310
CCCAAAG129000.013.1292961
CGCGAGT17800.012.9750691
GATATAT16550.012.6864181
CGTGAGC52550.012.584414523
CTATATG13150.012.5030422
GCTATAT13550.012.3961761
CTATACG3751.8321589E-712.1270642
Produced by FastQC (version 0.11.5)