FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005399540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005399540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8214847
Sequences flagged as poor quality0
Sequence length76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGATTAC49100.022.66212513
GGGATTA54300.021.90971412
GATTACA53100.020.75819214
ATTACAG61950.017.9041815
TGGGATT77600.016.18779611
TTACAGG68550.015.67003716
TACAGGC59150.014.670217
CCAAAGT72450.013.5198372
AAAGTGC62250.013.4308194
CTGGGAT101950.013.28238510
ACAGGCG38750.012.64163918
AAGTGCT74250.012.2499425
CAAAGTG74850.012.1042723
GGCGTGA35400.011.76254621
CCCAAAG99250.011.7418771
AGGCGTG38100.011.480020520
GAATCGC9300.011.28710925
GCGTGAG37700.011.23063422
GCTAATT29650.011.2130211
ACCGCGC18150.011.1813931
Produced by FastQC (version 0.11.5)