FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005399556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005399556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18287577
Sequences flagged as poor quality0
Sequence length76
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGATTAC145800.022.82858813
GGGATTA158950.022.67946212
GATTACA151600.022.16334214
ATTACAG165250.019.73956715
TGGGATT206100.018.79814511
TTACAGG177800.018.52356716
TACAGGC165550.016.70148817
AAAGTGC149300.015.4232054
GCTAATT79850.014.85963541
CGGCTAA21450.014.84876539
CTGGGAT267000.014.6938710
CCAAAGT173400.014.5731182
AGTAGCT107900.014.2705585
ATCGCTT27700.014.02530727
GGCTAAT54300.013.92318240
AAGTGCT173200.013.4768295
CAAAGTG181000.013.4765333
ACAGGCG113300.013.15949818
CTACTCG31800.012.6571262
ACCGCGC48700.012.64862531
Produced by FastQC (version 0.11.5)