FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005399566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005399566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37751703
Sequences flagged as poor quality0
Sequence length76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGATTAC237400.022.7775813
GGGATTA275800.022.43600712
GATTACA251700.021.51148414
ATTACAG282950.018.64089815
TGGGATT383400.017.98305911
TTACAGG315350.016.5815716
AAAGTGC285450.015.5577824
TACAGGC277100.015.51041317
CCAAAGT330850.014.7468772
CTGGGAT500150.014.03017110
CAAAGTG353050.013.6398223
AAGTGCT342500.013.2729185
ACAGGCG201400.012.61656218
CCCAAAG474850.012.5731991
GCGTGAG184000.012.11685922
GGCGTGA184400.011.93873221
CGTGAGC188850.011.93531423
GCTATAT47900.011.62356951
ACGCGAG54900.011.53908223
AGGCGTG202650.011.364387520
Produced by FastQC (version 0.11.5)