FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005399604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005399604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22539893
Sequences flagged as poor quality0
Sequence length76
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGATTA189250.021.60028312
GGATTAC172750.021.35388813
GATTACA187300.020.06914
ATTACAG205200.018.16483515
TGGGATT248800.017.85100711
TTACAGG218500.016.43448416
TACAGGC187450.016.1320117
AAAGTGC203700.015.6343454
CCAAAGT227250.014.7293572
CTGGGAT323650.014.16574710
GGCGTGA112150.013.7313921
CAAAGTG240500.013.6947473
ACAGGCG130450.013.54894618
AAGTGCT235850.013.3100925
ACCGCGC56300.013.24231
GCGTGAG119100.013.07706722
CGTGAGC122850.013.04822523
AGGCGTG129750.012.30019220
CCCAAAG313850.012.2911881
GCTAATT86900.012.08279541
Produced by FastQC (version 0.11.5)