FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005399693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005399693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15970230
Sequences flagged as poor quality0
Sequence length26
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACTGATG64400.018.0386351
ATGCGAT53500.017.4719471
TAGTTGG66900.017.4542081
CATGGCG76450.017.1569391
TGGACGC43850.017.0535761
GGTATTG70850.017.031421
TGATTTC65850.017.018971
AACTCCC42800.016.8179171
ATGGCGC47300.016.8017862
GAACCTA56850.016.7764991
TATTGAG39650.016.765943
GACTAAC45000.016.751061
AGACGTT52500.016.7193221
CCACTAC49200.016.6215531
CCGGGAT37300.016.563921
CGACCTT53800.016.5383111
CGGAGCT51000.016.5249771
TACACGA60750.016.5058571
CGAGCAC44000.016.472851
GGCTCGA55800.016.4651151
Produced by FastQC (version 0.11.5)