FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005399718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005399718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27778910
Sequences flagged as poor quality0
Sequence length76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGATTA324800.023.37011512
GGATTAC303550.023.34665313
GATTACA321950.022.12105614
TGGGATT390850.020.44000811
ATTACAG345550.020.43844815
TTACAGG363000.019.04133416
TACAGGC310700.018.87917317
ACCGCGC86400.018.18925331
ACAGGCG203000.017.93113718
AAAGTGC314350.017.6625464
GGCGTGA183650.017.19080721
CTGGGAT470400.017.17653810
CGTGAGC187150.017.1317623
GCGTGAG186000.016.93597822
CCAAAGT357450.016.4020652
AGGCGTG203150.016.07476820
AAGTGCT351000.016.069135
CAGGCGT198300.015.88511319
CAAAGTG370700.015.580143
CACCGCG108000.014.94022330
Produced by FastQC (version 0.11.5)