FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005399732

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005399732
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22465409
Sequences flagged as poor quality0
Sequence length76
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGATTA185200.021.69269612
GGATTAC172550.021.2963113
GATTACA181600.020.17733414
TGGGATT244900.018.1183211
ATTACAG202550.017.95230115
TTACAGG214250.016.77588716
TACAGGC187300.015.69655917
AAAGTGC195350.015.0078174
CCAAAGT222650.014.3603162
CTGGGAT317850.014.35618410
ACCGCGC56100.013.91301931
ACAGGCG130600.013.90921418
GGCGTGA114850.013.28747821
CAAAGTG235850.013.096923
AAGTGCT227150.013.0931575
GCGTGAG120700.012.52750422
CGTGAGC123550.012.49368923
CCCAAAG300850.012.2584491
CAGGCGT128800.012.06553219
AGGCGTG129250.012.05087320
Produced by FastQC (version 0.11.5)