FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005399741

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005399741
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24764584
Sequences flagged as poor quality0
Sequence length76
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGATTAC172550.024.7667213
GGGATTA189800.023.95429212
GATTACA176600.023.82218214
ATTACAG194150.021.59677715
TGGGATT252000.019.52796211
TTACAGG218300.018.71044216
ACGTCGA24400.016.9327491
TACAGGC209100.016.8387217
AAAGTGC204350.016.4086764
TGATCAA108350.015.9579219
CCAAAGT229850.015.1819062
CGTCGAG40050.014.4250291
CTGGGAT351700.014.39029910
AAGTGCT236000.014.3861645
ACCGCGC70850.014.12831731
CAAAGTG245100.014.1232253
GACTTGT122950.014.0630453
CGGCTAA27100.013.94816239
ACAGGCG158900.013.65629618
TTGTGAT128250.013.5365196
Produced by FastQC (version 0.11.5)