EGAF00005402092 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005402092
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4292448
Sequences flagged as poor quality	0
Sequence length	75
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8900	0.20734089265612538	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5194	0.12100321308493428	No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGAAATTTTTAATGCAGGTTTGGTAGTT	4787	0.11152144417358113	No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGATCCAATAACTTGACCAACGGAACAAG	4682	0.1090752875748291	No Hit
CTTATACACATCTCCGAGCCCACGAGACGACGACGTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	4625	0.10774737399264943	TruSeq Adapter, Index 2 (96% over 30bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATCAA	18165	42.675682	1
GGTATCA	6020	42.57995	1
TCGTATG	845	40.829712	40
CGTATGC	895	38.54423	41
TATGCCG	905	38.499516	43
ATCTCGT	915	37.329937	37
CTCGTAT	935	36.530582	39
CGTATCT	975	35.38905	34
CCGTCTT	970	34.855976	47
ACGTATC	980	34.85519	33
TCTCGTA	1010	33.818703	38
GCCGTCT	1055	32.69866	46
GTATCTC	1120	30.80743	35
GACGTAT	1145	30.131268	32
ATCAACG	25800	29.977703	3
TCAACGC	26395	29.314669	4
TATCAAC	26490	29.185192	2
CAACGCA	26965	28.733044	5
CGACGTA	1225	28.163185	31
AACGCAG	27535	28.150772	6