EGAF00005402100 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005402100
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4590774
Sequences flagged as poor quality	0
Sequence length	75
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14872	0.3239540870450168	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8556	0.18637380101917456	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6321	0.13768920012180952	No Hit
TCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTAGGACTTTTCGCTTCGAAGCGAAGGCTTCTCA	5621	0.12244122668639318	No Hit
TAGTAATACCCATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCCCCGATATGGCGT	5157	0.11233399858063149	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4891	0.1065397686751733	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATAT	20	0.0073611727	51.74868	46
GGTATCA	7455	0.0	47.954453	1
GTATCAA	21975	0.0	40.529938	1
TCGTATG	1075	0.0	32.09395	40
TATGCCG	1160	0.0	30.3351	43
CGTATGC	1170	0.0	30.07517	41
TATCAAC	29705	0.0	30.005264	2
ATCAACG	30325	0.0	29.412638	3
ATCTCGT	1105	0.0	29.349264	37
TCTCGTA	1125	0.0	29.134172	38
CTCGTAT	1115	0.0	29.086044	39
TCAACGC	30985	0.0	28.774994	4
CCGTCTT	1235	0.0	28.213852	47
CAACGCA	31665	0.0	28.18944	5
AACGCAG	32470	0.0	27.490564	6
GCCGTCT	1395	0.0	25.225163	46
CGTCTTC	1460	0.0	24.102386	48
ATACGCA	770	0.0	23.74951	6
ACGCAGA	38105	0.0	23.456856	7
CGCAGAG	38180	0.0	23.410778	8