EGAF00005402110 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005402110
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4379805
Sequences flagged as poor quality	0
Sequence length	75
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8797	0.2008536909748265	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5012	0.11443431842285216	No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGAAATTTTTAATGCAGGTTTGGTAGTT	4894	0.11174013454936921	No Hit
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGATCCAATAACTTGACCAACGGAACAAG	4843	0.11057569914642319	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	770	44.805523	40
GGTATCA	6230	44.301582	1
GTATCAA	18945	42.448757	1
ATCTCGT	825	41.818962	37
TATGCCG	840	39.837753	43
CGTATCT	850	39.778122	34
CTCGTAT	905	38.12139	39
CGTATGC	900	37.565224	41
ACGTATC	900	37.18403	33
TCTCGTA	955	35.765068	38
GACGTAT	985	35.02564	32
GCCGTCT	1070	31.596916	46
CGACGTA	1075	31.451391	31
CCGTCTT	1110	30.770494	47
ATCAACG	26345	30.511608	3
TCAACGC	26895	29.900476	4
TATCAAC	27130	29.692003	2
CAACGCA	27445	29.338644	5
GTATCTC	1160	28.850664	35
AACGCAG	28195	28.570457	6