EGAF00005402112 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005402112
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4156625
Sequences flagged as poor quality	0
Sequence length	75
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18552	0.4463236399723333	No Hit
CTTATACACATCTCCGAGCCCACGAGACGCGAGACTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	16118	0.3877665173067092	Illumina PCR Primer Index 6 (96% over 27bp)
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12032	0.28946561212522176	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7042	0.16941629326677293	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6872	0.16532643671247707	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5259	0.12652091540612878	No Hit
ATACACATCTCCGAGCCCACGAGACGCGAGACTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGGGGG	4648	0.11182148979039484	Illumina PCR Primer Index 6 (96% over 27bp)
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4543	0.10929540191862389	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	3020	43.982597	40
TATGCCG	3080	43.23417	43
CTCGTAT	3050	42.984917	39
CGTATGC	3130	42.544556	41
ATCTCGT	3145	41.576782	37
TCTCGTA	3170	41.13956	38
GTATCAA	26830	40.01714	1
CCGTCTT	3315	39.339146	47
TATCTCG	3470	37.78486	36
CGTCTTC	3600	36.225666	48
GACTATC	3720	35.430202	33
GCCGTCT	3720	34.96099	46
GGTATCA	10720	34.40409	1
GTATGCC	3955	33.668686	42
ATGCCGT	4130	32.1589	44
TGCCGTC	4180	31.774227	45
AGACTAT	4360	30.783012	32
CTTGAAA	4330	30.3592	57
GCGAACT	1115	30.013285	28
ATCAACG	39165	27.561523	3