EGAF00005402114 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005402114
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4414112
Sequences flagged as poor quality	0
Sequence length	75
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10185	0.23073723548473624	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6041	0.13685651836654802	No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGTCGCCCCAACCGAAATTTTTAATGCAGGTTTGGTAGTT	4883	0.11062247627608905	No Hit
CTTATACACATCTCCGAGCCCACGAGACGACGACGTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	4823	0.10926319948383728	TruSeq Adapter, Index 2 (96% over 30bp)
GTACATGCTAAGACTTCACCAGTCAAAGCGAACTACTATACTCAATTGATCCAATAACTTGACCAACGGAACAAG	4774	0.10815312343683169	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	6520	44.24961	1
GTATCAA	19365	42.03985	1
TCGTATG	1215	34.356373	40
TATGCCG	1275	32.7396	43
CGTATGC	1280	32.610603	41
ATCTCGT	1255	32.43779	37
CTCGTAT	1270	32.053574	39
CGTATCT	1340	30.63971	34
ACGTATC	1365	30.078201	33
CCGTCTT	1360	29.932045	47
ATCAACG	27285	29.75872	3
TCTCGTA	1395	29.429026	38
TATCAAC	27755	29.256449	2
TCAACGC	27875	29.086767	4
CAACGCA	28485	28.488108	5
AACGCAG	29140	27.871439	6
GCCGTCT	1490	27.783585	46
GACGTAT	1480	27.741047	32
GTATCTC	1535	26.297834	35
CGACGTA	1615	25.422132	31