EGAF00005402142 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005402142
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4101962
Sequences flagged as poor quality	0
Sequence length	75
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGAGTCGACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGGGGG	13419	0.3271361363172063	RNA PCR Primer, Index 41 (96% over 30bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5027	0.12255111090741454	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	2215	40.808544	40
CTCGTAT	2215	40.653286	39
TATGCCG	2225	40.467613	43
CGTATGC	2240	40.043102	41
ATCTCGT	2260	39.38584	37
TCTCGTA	2315	38.450108	38
CCGTCTT	2345	38.103474	47
GCCGTCT	2410	37.503864	46
CATCTCG	2440	36.76312	36
CGTCTTC	2565	35.105194	48
CGACATC	2565	34.970264	33
GTATCAA	27700	34.301075	1
GTCGACA	2780	32.885826	31
GACATCT	2765	32.44156	34
TCGACAT	2820	32.052345	32
AGTCGAC	2940	31.09612	30
ATGCCGT	3160	28.493809	44
GGTATCA	12730	28.07727	1
TGCCGTC	3350	27.392641	45
GAGTCGA	3365	27.168674	29