EGAF00005402146 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005402146
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4484583
Sequences flagged as poor quality	0
Sequence length	75
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14565	0.32477936075661884	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8613	0.19205799067605617	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6186	0.1379392465252622	No Hit
TCCATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTAGGACTTTTCGCTTCGAAGCGAAGGCTTCTCA	5375	0.11985506790709415	No Hit
TAGTAATACCCATCATAATCGGAGGCTTTGGCAACTGACTAGTTCCCCTAATAATCGGTGCCCCCGATATGGCGT	5033	0.11222894079561022	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4622	0.10306420909145844	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	7210	0.0	44.74079	1
TCGTATG	755	0.0	41.12844	40
GTATCAA	21485	0.0	40.723137	1
TATGCCG	820	0.0	38.28432	43
CTCGTAT	800	0.0	37.52197	39
CGTATGC	835	0.0	37.184673	41
TCTCGTA	815	0.0	36.40722	38
ATCTCGT	835	0.0	35.12199	37
CCGTCTT	955	0.0	32.150288	47
TATCAAC	29375	0.0	29.841135	2
ATCAACG	29550	0.0	29.664082	3
TCAACGC	30250	0.0	28.966558	4
CAACGCA	30870	0.0	28.39596	5
GCCGTCT	1095	0.0	28.353855	46
AACGCAG	31565	0.0	27.737953	6
AATCTCG	1130	0.0	26.86986	36
CGTCTTC	1230	0.0	25.242691	48
CTAGCGT	70	0.0013349965	24.641127	4
CGCAGAG	36770	0.0	23.802109	8
ACGCAGA	36765	0.0	23.795961	7