FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005402720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005402720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15972639
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGGTACATGTCCAGGGGCCCAGCCTCTGGGCCCAGTAACTCAGCTACT200550.1255584628188241No Hit
GGAGGAAGAGACTTTATTTGGCCCCAGCCCCTAGCCCCACAGCCAAGACA196340.12292270550908962No Hit
GAGGTATTGATGACTTTATTATTCTGCAGGTACATGTCCAGGGGCCCAGC195600.12245941325037146No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)